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Journal Articles

The nanoscale organization of reticulon 4 shapes local endoplasmic reticulum structure in situ

Lukas A. Fuentes, Zach Marin, Jonathan Tyson, David Baddeley, Joerg Bewersdorf
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (10): e202301112.
https://doi.org/10.1083/jcb.202301112
Published: 26 July 2023
View article titled, The nanoscale organization of reticulon 4 shapes local endoplasmic reticulum structure in situ
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Includes: Supplementary data
Journal Articles

A live-cell marker to visualize the dynamics of stable microtubules throughout the cell cycle

Klara I. Jansen, Malina K. Iwanski, Mithila Burute, Lukas C. Kapitein
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (5): e202106105.
https://doi.org/10.1083/jcb.202106105
Published: 02 March 2023
View article titled, A live-cell marker to visualize the dynamics of stable microtubules throughout the cell cycle
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Journal Articles

Rapid profiling of DNA replication dynamics using mass spectrometry–based analysis of nascent DNA

Mohamed E. Ashour, Andrea K. Byrum, Alice Meroni, Jun Xia, Saurabh Singh, Roberto Galletto, Susan M. Rosenberg, Alessandro Vindigni, Nima Mosammaparast
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (4): e202207121.
https://doi.org/10.1083/jcb.202207121
Published: 16 February 2023
View article titled, Rapid profiling of DNA replication dynamics using mass spectrometry–based analysis of nascent DNA
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Includes: Supplementary data
Journal Articles

Semi-automated 3D fluorescence speckle analyzer (3D-Speckler) for microscope calibration and nanoscale measurement

Jonathan Loi, Xiaofei Qu, Aussie Suzuki
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (4): e202202078.
https://doi.org/10.1083/jcb.202202078
Published: 30 January 2023
View article titled, Semi-automated 3D fluorescence speckle analyzer (3D-Speckler) for microscope calibration and nanoscale measurement
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Includes: Supplementary data
Journal Articles

Nanoscale structural organization and stoichiometry of the budding yeast kinetochore

In Special Collection:
Structural Biology 2023
Konstanty Cieslinski, Yu-Le Wu, Lisa Nechyporenko, Sarah Janice Hörner, Duccio Conti, Michal Skruzny, Jonas Ries
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (4): e202209094.
https://doi.org/10.1083/jcb.202209094
Published: 27 January 2023
View article titled, Nanoscale structural organization and stoichiometry of the budding yeast kinetochore
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Includes: Supplementary data
Journal Articles

CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM

In Special Collection:
Structural Biology 2023
José M. Serra Lleti, Anna M. Steyer, Nicole L. Schieber, Beate Neumann, Christian Tischer, Volker Hilsenstein, Mike Holtstrom, David Unrau, Robert Kirmse, John M. Lucocq, Rainer Pepperkok, Yannick Schwab
Journal: Journal of Cell Biology
J Cell Biol (2022) 222 (3): e202209127.
https://doi.org/10.1083/jcb.202209127
Published: 23 December 2022
View article titled, CLEM<em>Site</em>, a software for automated phenotypic screens using light microscopy and FIB-SEM
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Includes: Supplementary data
Journal Articles

Deep neural network automated segmentation of cellular structures in volume electron microscopy

In Special Collection:
Structural Biology 2023
Benjamin Gallusser, Giorgio Maltese, Giuseppe Di Caprio, Tegy John Vadakkan, Anwesha Sanyal, Elliott Somerville, Mihir Sahasrabudhe, Justin O’Connor, Martin Weigert, Tom Kirchhausen
Journal: Journal of Cell Biology
J Cell Biol (2022) 222 (2): e202208005.
https://doi.org/10.1083/jcb.202208005
Published: 05 December 2022
View article titled, Deep neural network automated segmentation of cellular structures in volume electron microscopy
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Includes: Supplementary data
Journal Articles

Real-time imaging of RNA polymerase I activity in living human cells

Yujuan Fu, Yaxin Liu, Tanye Wen, Jie Fang, Yalong Chen, Ziying Zhou, Xinyi Gu, Hao Wu, Jinghao Sheng, Zhengping Xu, Wei Zou, Baohui Chen
Journal: Journal of Cell Biology
J Cell Biol (2022) 222 (1): e202202110.
https://doi.org/10.1083/jcb.202202110
Published: 25 October 2022
View article titled, Real-time imaging of RNA polymerase I activity in living human cells
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Includes: Supplementary data
Journal Articles

Quality assessment in light microscopy for routine use through simple tools and robust metrics

In Special Collection:
Tools Collection 2023
Orestis Faklaris, Leslie Bancel-Vallée, Aurélien Dauphin, Baptiste Monterroso, Perrine Frère, David Geny, Tudor Manoliu, Sylvain de Rossi, Fabrice P. Cordelières, Damien Schapman, Roland Nitschke, Julien Cau, Thomas Guilbert
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (11): e202107093.
https://doi.org/10.1083/jcb.202107093
Published: 29 September 2022
View article titled, Quality assessment in light microscopy for routine use through simple tools and robust metrics
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Journal Articles

Endosomal escape of delivered mRNA from endosomal recycling tubules visualized at the nanoscale

In Special Collection:
The Year in Cell Biology: 2022
Prasath Paramasivam, Christian Franke, Martin Stöter, Andreas Höijer, Stefano Bartesaghi, Alan Sabirsh, Lennart Lindfors, Marianna Yanez Arteta, Anders Dahlén, Annette Bak, Shalini Andersson, Yannis Kalaidzidis, Marc Bickle, Marino Zerial
Journal: Journal of Cell Biology
J Cell Biol (2021) 221 (2): e202110137.
https://doi.org/10.1083/jcb.202110137
Published: 09 December 2021
View article titled, Endosomal escape of delivered mRNA from endosomal recycling tubules visualized at the nanoscale
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Includes: Supplementary data
Journal Articles

Live imaging of transcription sites using an elongating RNA polymerase II–specific probe

In Special Collection:
Tools Collection 2023 , The Year in Cell Biology: 2022
Satoshi Uchino, Yuma Ito, Yuko Sato, Tetsuya Handa, Yasuyuki Ohkawa, Makio Tokunaga, Hiroshi Kimura
Journal: Journal of Cell Biology
J Cell Biol (2021) 221 (2): e202104134.
https://doi.org/10.1083/jcb.202104134
Published: 02 December 2021
View article titled, Live imaging of transcription sites using an elongating RNA polymerase II–specific probe
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Includes: Supplementary data
Journal Articles

Volumetric morphometry reveals spindle width as the best predictor of mammalian spindle scaling

In Special Collection:
Tools Collection 2023
Tobias Kletter, Sebastian Reusch, Tommaso Cavazza, Nils Dempewolf, Christian Tischer, Simone Reber
Journal: Journal of Cell Biology
J Cell Biol (2021) 221 (1): e202106170.
https://doi.org/10.1083/jcb.202106170
Published: 17 November 2021
View article titled, Volumetric morphometry reveals spindle width as the best predictor of mammalian spindle scaling
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Journal Articles

High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)

In Special Collection:
Chromatin Biology 2022 , Tools Collection 2023
Daniel A. Bartlett, Vishnu Dileep, Tetsuya Handa, Yasuyuki Ohkawa, Hiroshi Kimura, Steven Henikoff, David M. Gilbert
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (12): e202103078.
https://doi.org/10.1083/jcb.202103078
Published: 16 November 2021
View article titled, High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)
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Includes: Supplementary data
Journal Articles

Rab35 controls formation of luminal projections required for bile canalicular morphogenesis

Claudiu Andrei Cozmescu, Paul Gissen
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (10): e202108047.
https://doi.org/10.1083/jcb.202108047
Published: 13 September 2021
View article titled, Rab35 controls formation of luminal projections required for bile canalicular morphogenesis
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Journal Articles

Label-retention expansion microscopy

Xiaoyu Shi, Qi Li, Zhipeng Dai, Arthur A. Tran, Siyu Feng, Alejandro D. Ramirez, Zixi Lin, Xiaomeng Wang, Tracy T. Chow, Jiapei Chen, Dhivya Kumar, Andrew R. McColloch, Jeremy F. Reiter, Eric J. Huang, Ian B. Seiple, Bo Huang
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (9): e202105067.
https://doi.org/10.1083/jcb.202105067
Published: 06 July 2021
View article titled, Label-retention expansion microscopy
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Includes: Supplementary data
Journal Articles

ESCRT, not intralumenal fragments, sorts ubiquitinated vacuole membrane proteins for degradation

Xi Yang, Lucas Reist, Dominic A. Chomchai, Liang Chen, Felichi Mae Arines, Ming Li
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (8): e202012104.
https://doi.org/10.1083/jcb.202012104
Published: 28 May 2021
View article titled, ESCRT, not intralumenal fragments, sorts ubiquitinated vacuole membrane proteins for degradation
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Includes: Supplementary data
Journal Articles

O-GlcNAc modification of nuclear pore complexes accelerates bidirectional transport

Tae Yeon Yoo, Timothy J. Mitchison
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (7): e202010141.
https://doi.org/10.1083/jcb.202010141
Published: 28 April 2021
View article titled, <em>O</em>-GlcNAc modification of nuclear pore complexes accelerates bidirectional transport
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Journal Articles

Tension promotes kinetochore–microtubule release by Aurora B kinase

Geng-Yuan Chen, Fioranna Renda, Huaiying Zhang, Alper Gokden, Daniel Z. Wu, David M. Chenoweth, Alexey Khodjakov, Michael A. Lampson
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (6): e202007030.
https://doi.org/10.1083/jcb.202007030
Published: 27 April 2021
View article titled, Tension promotes kinetochore–microtubule release by Aurora B kinase
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Includes: Supplementary data
Journal Articles

Recognition of RNA by the S9.6 antibody creates pervasive artifacts when imaging RNA:DNA hybrids

John A. Smolka, Lionel A. Sanz, Stella R. Hartono, Frédéric Chédin
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (6): e202004079.
https://doi.org/10.1083/jcb.202004079
Published: 08 April 2021
View article titled, Recognition of RNA by the S9.6 antibody creates pervasive artifacts when imaging RNA:DNA hybrids
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Journal Articles

Superresolution characterization of core centriole architecture

In Special Collection:
The Year in Cell Biology: 2021
Yuan Tian, Chenxi Wei, Jianfeng He, Yuxuan Yan, Nan Pang, Xiaomin Fang, Xin Liang, Jingyan Fu
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (4): e202005103.
https://doi.org/10.1083/jcb.202005103
Published: 03 February 2021
View article titled, Superresolution characterization of core centriole architecture
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