In macroautophagy, cellular components are sequestered within autophagosomes and transported to lysosomes/vacuoles for degradation. Although phosphatidylinositol 3-kinase complex I (PI3KCI) plays a pivotal role in the regulation of autophagosome biogenesis, little is known about how this complex localizes to the pre-autophagosomal structure (PAS). In Saccharomyces cerevisiae, PI3KCI is composed of PI3K Vps34 and conserved subunits Vps15, Vps30, Atg14, and Atg38. In this study, we discover that PI3KCI interacts with the vacuolar membrane anchor Vac8, the PAS scaffold Atg1 complex, and the pre-autophagosomal vesicle component Atg9 via the Atg14 C-terminal region, the Atg38 C-terminal region, and the Vps30 BARA domain, respectively. While the Atg14–Vac8 interaction is constitutive, the Atg38–Atg1 complex interaction and the Vps30–Atg9 interaction are enhanced upon macroautophagy induction depending on Atg1 kinase activity. These interactions cooperate to target PI3KCI to the PAS. These findings provide a molecular basis for PAS targeting of PI3KCI during autophagosome biogenesis.
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7 August 2023
Article|
July 12 2023
The Atg1 complex, Atg9, and Vac8 recruit PI3K complex I to the pre-autophagosomal structure
Kanae Hitomi
,
Kanae Hitomi
(Conceptualization, Data curation, Formal analysis, Investigation, Project administration, Validation, Visualization, Writing - original draft)
1
Cell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology
, Yokohama, Japan
2
School of Life Science and Technology, Tokyo Institute of Technology
, Yokohama, Japan
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Tetsuya Kotani
,
Tetsuya Kotani
(Conceptualization)
1
Cell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology
, Yokohama, Japan
2
School of Life Science and Technology, Tokyo Institute of Technology
, Yokohama, Japan
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Nobuo N. Noda
,
Nobuo N. Noda
(Funding acquisition, Investigation, Visualization)
3
Institute for Genetic Medicine, Hokkaido University
, Sapporo, Japan
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Yayoi Kimura
,
Yayoi Kimura
(Investigation)
4
Advanced Medical Research Center, Yokohama City University
, Yokohama, Japan
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Hitoshi Nakatogawa
(Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing)
1
Cell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology
, Yokohama, Japan
2
School of Life Science and Technology, Tokyo Institute of Technology
, Yokohama, Japan
Correspondence to Hitoshi Nakatogawa: hnakatogawa@bio.titech.ac.jp
Search for other works by this author on:
Kanae Hitomi
Conceptualization, Data curation, Formal analysis, Investigation, Project administration, Validation, Visualization, Writing - original draft
1
Cell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology
, Yokohama, Japan
2
School of Life Science and Technology, Tokyo Institute of Technology
, Yokohama, Japan
Tetsuya Kotani
Conceptualization
1
Cell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology
, Yokohama, Japan
2
School of Life Science and Technology, Tokyo Institute of Technology
, Yokohama, Japan
Nobuo N. Noda
Funding acquisition, Investigation, Visualization
3
Institute for Genetic Medicine, Hokkaido University
, Sapporo, Japan
Yayoi Kimura
Investigation
4
Advanced Medical Research Center, Yokohama City University
, Yokohama, Japan
Hitoshi Nakatogawa
Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing
1
Cell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology
, Yokohama, Japan
2
School of Life Science and Technology, Tokyo Institute of Technology
, Yokohama, Japan
Correspondence to Hitoshi Nakatogawa: hnakatogawa@bio.titech.ac.jp
Disclosures: The authors declare no competing interests exist.
Received:
October 04 2022
Revision Received:
March 31 2023
Accepted:
May 18 2023
Online ISSN: 1540-8140
Print ISSN: 0021-9525
Funding
Funder(s):
KAKENHI Grants-in-Aid for Scientific Research
- Award Id(s): JP19H05708
Funder(s):
Ministry of Education, Culture, Sports, Science and Technology
- Award Id(s): JP19H05707
Funder(s):
Japan Agency for Medical Research and Development
- Award Id(s): JP21gm1410004
Funder(s):
Japan Science and Technology Agency
- Award Id(s): JPMJCR20E3
Funder(s):
Tokyo Tech Fund
© 2023 Hitomi et al.
2023
Hitomi et al.
This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).
J Cell Biol (2023) 222 (8): e202210017.
Article history
Received:
October 04 2022
Revision Received:
March 31 2023
Accepted:
May 18 2023
Citation
Kanae Hitomi, Tetsuya Kotani, Nobuo N. Noda, Yayoi Kimura, Hitoshi Nakatogawa; The Atg1 complex, Atg9, and Vac8 recruit PI3K complex I to the pre-autophagosomal structure. J Cell Biol 7 August 2023; 222 (8): e202210017. doi: https://doi.org/10.1083/jcb.202210017
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