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Journal Articles

The mechanism of Atg15-mediated membrane disruption in autophagy

Yoko Kagohashi, Michiko Sasaki, Alexander I. May, Tomoko Kawamata, Yoshinori Ohsumi
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (12): e202306120.
https://doi.org/10.1083/jcb.202306120
Published: 02 November 2023
View article titled, The mechanism of Atg15-mediated membrane disruption in autophagy
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Includes: Supplementary data
Journal Articles

Inhibition of lysosome-tethered Ragulator-Rag-3D complex restricts the replication of Enterovirus 71 and Coxsackie A16

Xinhui Wang, Zhilin Hu, Wei Zhang, Shuwei Wu, Yongjin Hao, Xia Xiao, Jingjing Li, Xiaoliang Yu, Chengkui Yang, Jingfeng Wang, Huiying Zhang, Feng Ma, Weifeng Shi, Jianwei Wang, Xiaobo Lei, Xiaohu Zhang, Sudan He
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (12): e202303108.
https://doi.org/10.1083/jcb.202303108
Published: 31 October 2023
View article titled, Inhibition of lysosome-tethered Ragulator-Rag-3D complex restricts the replication of Enterovirus 71 and Coxsackie A16
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Includes: Supplementary data
Journal Articles

The TMEM192-mKeima probe specifically assays lysophagy and reveals its initial steps

Takayuki Shima, Monami Ogura, Ruriko Matsuda, Shuhei Nakamura, Natsuko Jin, Tamotsu Yoshimori, Akiko Kuma
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (12): e202204048.
https://doi.org/10.1083/jcb.202204048
Published: 06 October 2023
View article titled, The TMEM192-mKeima probe specifically assays lysophagy and reveals its initial steps
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Includes: Supplementary data
Journal Articles

Lysosome damage triggers direct ATG8 conjugation and ATG2 engagement via non-canonical autophagy

Jake Cross, Joanne Durgan, David G. McEwan, Matthew Tayler, Kevin M. Ryan, Oliver Florey
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (12): e202303078.
https://doi.org/10.1083/jcb.202303078
Published: 05 October 2023
View article titled, Lysosome damage triggers direct ATG8 conjugation and ATG2 engagement via non-canonical autophagy
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Includes: Supplementary data
Journal Articles

The Atg1 complex, Atg9, and Vac8 recruit PI3K complex I to the pre-autophagosomal structure

Kanae Hitomi, Tetsuya Kotani, Nobuo N. Noda, Yayoi Kimura, Hitoshi Nakatogawa
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (8): e202210017.
https://doi.org/10.1083/jcb.202210017
Published: 12 July 2023
View article titled, The Atg1 complex, Atg9, and Vac8 recruit PI3K complex I to the pre-autophagosomal structure
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Includes: Supplementary data
Journal Articles

PTEN is both an activator and a substrate of chaperone-mediated autophagy

Katherine K. Zhang, Calvin M. Burns, Mary E. Skinner, David B. Lombard, Richard A. Miller, S. Joseph Endicott
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (9): e202208150.
https://doi.org/10.1083/jcb.202208150
Published: 07 July 2023
View article titled, PTEN is both an activator and a substrate of chaperone-mediated autophagy
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Includes: Supplementary data
Journal Articles

ASC oligomer favors caspase-1CARD domain recruitment after intracellular potassium efflux

Fátima Martín-Sánchez, Vincent Compan, Alejandro Peñín-Franch, Ana Tapia-Abellán, Ana I. Gómez, María C. Baños-Gregori, Florian I. Schmidt, Pablo Pelegrin
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (8): e202003053.
https://doi.org/10.1083/jcb.202003053
Published: 04 July 2023
View article titled, ASC oligomer favors caspase-1<sup>CARD</sup> domain recruitment after intracellular potassium efflux
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Includes: Supplementary data
Journal Articles

Toward a standard model for autophagosome biogenesis

Annan S.I. Cook, James H. Hurley
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (7): e202304011.
https://doi.org/10.1083/jcb.202304011
Published: 05 June 2023
View article titled, Toward a standard model for autophagosome biogenesis
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Journal Articles

Parallel phospholipid transfer by Vps13 and Atg2 determines autophagosome biogenesis dynamics

In Special Collection:
Lipid and Membrane Biology 2023
Rahel Dabrowski, Susanna Tulli, Martin Graef
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (7): e202211039.
https://doi.org/10.1083/jcb.202211039
Published: 28 April 2023
View article titled, Parallel phospholipid transfer by Vps13 and Atg2 determines autophagosome biogenesis dynamics
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Includes: Supplementary data
Journal Articles

Quantitative analysis of autophagy reveals the role of ATG9 and ATG2 in autophagosome formation

David G. Broadbent, Carlo Barnaba, Gloria I. Perez, Jens C. Schmidt
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (7): e202210078.
https://doi.org/10.1083/jcb.202210078
Published: 28 April 2023
View article titled, Quantitative analysis of autophagy reveals the role of ATG9 and ATG2 in autophagosome formation
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Includes: Supplementary data
Journal Articles

ATG9 vesicles comprise the seed membrane of mammalian autophagosomes

Taryn J. Olivas, Yumei Wu, Shenliang Yu, Lin Luan, Peter Choi, Emily D. Guinn, Shanta Nag, Pietro V. De Camilli, Kallol Gupta, Thomas J. Melia
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (7): e202208088.
https://doi.org/10.1083/jcb.202208088
Published: 28 April 2023
View article titled, ATG9 vesicles comprise the seed membrane of mammalian autophagosomes
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Includes: Supplementary data
Journal Articles

LC3B is a cofactor for LMX1B-mediated transcription of autophagy genes in dopaminergic neurons

Athanasios Kournoutis, Terje Johansen
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (5): e202303008.
https://doi.org/10.1083/jcb.202303008
Published: 10 April 2023
View article titled, LC3B is a cofactor for LMX1B-mediated transcription of autophagy genes in dopaminergic neurons
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Journal Articles

Autolysosomal exocytosis of lipids protect neurons from ferroptosis

In Special Collection:
Cellular Neurobiology 2023
Isha Ralhan, Jinlan Chang, Matthew J. Moulton, Lindsey D. Goodman, Nathanael Y.J. Lee, Greg Plummer, H. Amalia Pasolli, Doreen Matthies, Hugo J. Bellen, Maria S. Ioannou
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (6): e202207130.
https://doi.org/10.1083/jcb.202207130
Published: 10 April 2023
View article titled, Autolysosomal exocytosis of lipids protect neurons from ferroptosis
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Includes: Supplementary data
Journal Articles

PERK prevents rhodopsin degradation during retinitis pigmentosa by inhibiting IRE1-induced autophagy

Ning Zhao, Ning Li, Tao Wang
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (5): e202208147.
https://doi.org/10.1083/jcb.202208147
Published: 06 April 2023
View article titled, PERK prevents rhodopsin degradation during retinitis pigmentosa by inhibiting IRE1-induced autophagy
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Includes: Supplementary data
Journal Articles

ATG8-dependent LMX1B-autophagy crosstalk shapes human midbrain dopaminergic neuronal resilience

In Special Collection:
Cellular Neurobiology 2023
Natalia Jiménez-Moreno, Madhu Kollareddy, Petros Stathakos, Joanna J. Moss, Zuriñe Antón, Deborah K. Shoemark, Richard B. Sessions, Ralph Witzgall, Maeve Caldwell, Jon D. Lane
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (5): e201910133.
https://doi.org/10.1083/jcb.201910133
Published: 04 April 2023
View article titled, ATG8-dependent LMX1B-autophagy crosstalk shapes human midbrain dopaminergic neuronal resilience
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Includes: Supplementary data
Journal Articles

Fine-tune TMEM11 to unleash basal mitophagy

Thomas G. McWilliams
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (4): e202302118.
https://doi.org/10.1083/jcb.202302118
Published: 17 March 2023
View article titled, Fine-tune TMEM11 to unleash basal mitophagy
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Journal Articles

The outer mitochondrial membrane protein TMEM11 demarcates spatially restricted BNIP3/BNIP3L-mediated mitophagy

Mehmet Oguz Gok, Olivia M. Connor, Xun Wang, Cameron J. Menezes, Claire B. Llamas, Prashant Mishra, Jonathan R. Friedman
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (4): e202204021.
https://doi.org/10.1083/jcb.202204021
Published: 16 February 2023
View article titled, The outer mitochondrial membrane protein TMEM11 demarcates spatially restricted BNIP3/BNIP3L-mediated mitophagy
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Includes: Supplementary data
Journal Articles

TBK1 phosphorylation activates LIR-dependent degradation of the inflammation repressor TNIP1

Jianwen Zhou, Nikoline Lander Rasmussen, Hallvard Lauritz Olsvik, Vyacheslav Akimov, Zehan Hu, Gry Evjen, Stéphanie Kaeser-Pebernard, Devanarayanan Siva Sankar, Carole Roubaty, Pauline Verlhac, Nicole van de Beek, Fulvio Reggiori, Yakubu Princely Abudu, Blagoy Blagoev, Trond Lamark, Terje Johansen, Jörn Dengjel
Journal: Journal of Cell Biology
J Cell Biol (2022) 222 (2): e202108144.
https://doi.org/10.1083/jcb.202108144
Published: 27 December 2022
View article titled, TBK1 phosphorylation activates LIR-dependent degradation of the inflammation repressor TNIP1
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Includes: Supplementary data
Journal Articles

A plant-specific bridging adaptor for amphisome biogenesis

Jérôme Koestel, Henri Batoko
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (12): e202210011.
https://doi.org/10.1083/jcb.202210011
Published: 11 November 2022
View article titled, A plant-specific bridging adaptor for amphisome biogenesis
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Journal Articles

Viral protein engagement of GBF1 induces host cell vulnerability through synthetic lethality

Arti T. Navare, Fred D. Mast, Jean Paul Olivier, Thierry Bertomeu, Maxwell L. Neal, Lindsay N. Carpp, Alexis Kaushansky, Jasmin Coulombe-Huntington, Mike Tyers, John D. Aitchison
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (11): e202011050.
https://doi.org/10.1083/jcb.202011050
Published: 28 October 2022
View article titled, Viral protein engagement of GBF1 induces host cell vulnerability through synthetic lethality
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Includes: Supplementary data