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Journal Articles

Oncogenic signaling is coupled to colorectal cancer cell differentiation state

Thomas Sell, Christian Klotz, Matthias M. Fischer, Rosario Astaburuaga-García, Susanne Krug, Jarno Drost, Hans Clevers, Christine Sers, Markus Morkel, Nils Blüthgen
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (6): e202204001.
DOI: https://doi.org/10.1083/jcb.202204001
Published: 05 April 2023
View article titled, Oncogenic signaling is coupled to colorectal cancer cell differentiation state
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Journal Articles

Deep learning techniques and mathematical modeling allow 3D analysis of mitotic spindle dynamics

David Dang, Christoforos Efstathiou, Dijue Sun, Haoran Yue, Nishanth R. Sastry, Viji M. Draviam
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (5): e202111094.
DOI: https://doi.org/10.1083/jcb.202111094
Published: 02 March 2023
View article titled, Deep learning techniques and mathematical modeling allow 3D analysis of mitotic spindle dynamics
Click here to open pdf in another window PDF for Deep learning techniques and mathematical modeling allow 3D analysis of mitotic spindle dynamics
Includes: Supplementary data
Journal Articles

Quantifying organellar ultrastructure in cryo-electron tomography using a surface morphometrics pipeline

In Special Collection:
Structural Biology 2023
Benjamin A. Barad, Michaela Medina, Daniel Fuentes, R. Luke Wiseman, Danielle A. Grotjahn
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (4): e202204093.
DOI: https://doi.org/10.1083/jcb.202204093
Published: 14 February 2023
View article titled, Quantifying organellar ultrastructure in cryo-electron tomography using a surface morphometrics pipeline
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Includes: Supplementary data
Journal Articles

Semi-automated 3D fluorescence speckle analyzer (3D-Speckler) for microscope calibration and nanoscale measurement

Jonathan Loi, Xiaofei Qu, Aussie Suzuki
Journal: Journal of Cell Biology
J Cell Biol (2023) 222 (4): e202202078.
DOI: https://doi.org/10.1083/jcb.202202078
Published: 30 January 2023
View article titled, Semi-automated 3D fluorescence speckle analyzer (3D-Speckler) for microscope calibration and nanoscale measurement
Click here to open pdf in another window PDF for Semi-automated 3D fluorescence speckle analyzer (3D-Speckler) for microscope calibration and nanoscale measurement
Includes: Supplementary data
Journal Articles

ILEE: Algorithms and toolbox for unguided and accurate quantitative analysis of cytoskeletal images

Pai Li, Ze Zhang, Yiying Tong, Bardees M. Foda, Brad Day
Journal: Journal of Cell Biology
J Cell Biol (2022) 222 (2): e202203024.
DOI: https://doi.org/10.1083/jcb.202203024
Published: 19 December 2022
View article titled, ILEE: Algorithms and toolbox for unguided and accurate quantitative analysis of cytoskeletal images
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Journal Articles

Regulation of the COPII secretory machinery via focal adhesions and extracellular matrix signaling

Juan Jung, Muzamil Majid Khan, Jonathan Landry, Aliaksandr Halavatyi, Pedro Machado, Miriam Reiss, Rainer Pepperkok
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (8): e202110081.
DOI: https://doi.org/10.1083/jcb.202110081
Published: 13 July 2022
View article titled, Regulation of the COPII secretory machinery via focal adhesions and extracellular matrix signaling
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Includes: Supplementary data
Journal Articles

A two-step search and run response to gradients shapes leukocyte navigation in vivo

In Special Collection:
Immune Cell Biology 2023
Antonios Georgantzoglou, Hugo Poplimont, Hazel A. Walker, Tim Lämmermann, Milka Sarris
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (8): e202103207.
DOI: https://doi.org/10.1083/jcb.202103207
Published: 22 June 2022
View article titled, A two-step search and run response to gradients shapes leukocyte navigation in vivo
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Journal Articles

Analysis of conditional colocalization relationships and hierarchies in three-color microscopy images

Jesus Vega-Lugo, Bruno da Rocha-Azevedo, Aparajita Dasgupta, Khuloud Jaqaman
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (7): e202106129.
DOI: https://doi.org/10.1083/jcb.202106129
Published: 13 May 2022
View article titled, Analysis of conditional colocalization relationships and hierarchies in three-color microscopy images
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Journal Articles

A lysosomal biogenesis map reveals the cargo spectrum of yeast vacuolar protein targeting pathways

In Special Collection:
Tools Collection 2023
Sebastian Eising, Bianca Esch, Mike Wälte, Prado Vargas Duarte, Stefan Walter, Christian Ungermann, Maria Bohnert, Florian Fröhlich
Journal: Journal of Cell Biology
J Cell Biol (2022) 221 (4): e202107148.
DOI: https://doi.org/10.1083/jcb.202107148
Published: 17 February 2022
View article titled, A lysosomal biogenesis map reveals the cargo spectrum of yeast vacuolar protein targeting pathways
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Includes: Supplementary data
Journal Articles

Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression

In Special Collection:
Chromatin Biology 2022
Rebeca San Martin, Priyojit Das, Renata Dos Reis Marques, Yang Xu, Justin M. Roberts, Jacob T. Sanders, Rosela Golloshi, Rachel Patton McCord
Journal: Journal of Cell Biology
J Cell Biol (2021) 221 (2): e202104108.
DOI: https://doi.org/10.1083/jcb.202104108
Published: 10 December 2021
View article titled, Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression
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Includes: Supplementary data
Journal Articles

Volumetric morphometry reveals spindle width as the best predictor of mammalian spindle scaling

In Special Collection:
Tools Collection 2023
Tobias Kletter, Sebastian Reusch, Tommaso Cavazza, Nils Dempewolf, Christian Tischer, Simone Reber
Journal: Journal of Cell Biology
J Cell Biol (2021) 221 (1): e202106170.
DOI: https://doi.org/10.1083/jcb.202106170
Published: 17 November 2021
View article titled, Volumetric morphometry reveals spindle width as the best predictor of mammalian spindle scaling
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Journal Articles

Cell cycle–independent integration of stress signals by Xbp1 promotes Non-G1/G0 quiescence entry

Orlando Argüello-Miranda, Ashley J. Marchand, Taylor Kennedy, Marielle A.X. Russo, Jungsik Noh
Journal: Journal of Cell Biology
J Cell Biol (2021) 221 (1): e202103171.
DOI: https://doi.org/10.1083/jcb.202103171
Published: 25 October 2021
View article titled, Cell cycle–independent integration of stress signals by Xbp1 promotes Non-G1/G0 quiescence entry
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Includes: Supplementary data
Journal Articles

VPS13D promotes peroxisome biogenesis

Heather A. Baldwin, Chunxin Wang, Gil Kanfer, Hetal V. Shah, Antonio Velayos-Baeza, Marija Dulovic-Mahlow, Norbert Brüggemann, Allyson Anding, Eric H. Baehrecke, Dragan Maric, William A. Prinz, Richard J. Youle
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (5): e202001188.
DOI: https://doi.org/10.1083/jcb.202001188
Published: 23 April 2021
View article titled, VPS13D promotes peroxisome biogenesis
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Includes: Supplementary data
Journal Articles

Stochastic combinations of actin regulatory proteins are sufficient to drive filopodia formation

Ulrich Dobramysl, Iris Katharina Jarsch, Yoshiko Inoue, Hanae Shimo, Benjamin Richier, Jonathan R. Gadsby, Julia Mason, Alicja Szałapak, Pantelis Savvas Ioannou, Guilherme Pereira Correia, Astrid Walrant, Richard Butler, Edouard Hannezo, Benjamin D. Simons, Jennifer L. Gallop
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (4): e202003052.
DOI: https://doi.org/10.1083/jcb.202003052
Published: 19 March 2021
View article titled, Stochastic combinations of actin regulatory proteins are sufficient to drive filopodia formation
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Includes: Supplementary data
Journal Articles

Parameter-free molecular super-structures quantification in single-molecule localization microscopy

Mattia Marenda, Elena Lazarova, Sebastian van de Linde, Nick Gilbert, Davide Michieletto
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (5): e202010003.
DOI: https://doi.org/10.1083/jcb.202010003
Published: 18 March 2021
View article titled, Parameter-free molecular super-structures quantification in single-molecule localization microscopy
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Includes: Supplementary data
Journal Articles

Type V myosin focuses the polarisome and shapes the tip of yeast cells

Alexander Dünkler, Marcin Leda, Jan-Michael Kromer, Joachim Neller, Thomas Gronemeyer, Andrew B. Goryachev, Nils Johnsson
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (5): e202006193.
DOI: https://doi.org/10.1083/jcb.202006193
Published: 03 March 2021
View article titled, Type V myosin focuses the polarisome and shapes the tip of yeast cells
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Includes: Supplementary data
Journal Articles

Computational analyses reveal spatial relationships between nuclear pore complexes and specific lamins

Mark Kittisopikul, Takeshi Shimi, Meltem Tatli, Joseph Riley Tran, Yixian Zheng, Ohad Medalia, Khuloud Jaqaman, Stephen A. Adam, Robert D. Goldman
Journal: Journal of Cell Biology
J Cell Biol (2021) 220 (4): e202007082.
DOI: https://doi.org/10.1083/jcb.202007082
Published: 11 February 2021
View article titled, Computational analyses reveal spatial relationships between nuclear pore complexes and specific lamins
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Journal Articles

Adaptability of the ubiquitin-proteasome system to proteolytic and folding stressors

Jeremy J. Work, Onn Brandman
Journal: Journal of Cell Biology
J Cell Biol (2020) 220 (3): e201912041.
DOI: https://doi.org/10.1083/jcb.201912041
Published: 31 December 2020
View article titled, Adaptability of the ubiquitin-proteasome system to proteolytic and folding stressors
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Journal Articles

Spatial regulation of clathrin-mediated endocytosis through position-dependent site maturation

Ross T.A. Pedersen, Julian E. Hassinger, Paul Marchando, David G. Drubin
Journal: Journal of Cell Biology
J Cell Biol (2020) 219 (11): e202002160.
DOI: https://doi.org/10.1083/jcb.202002160
Published: 07 October 2020
View article titled, Spatial regulation of clathrin-mediated endocytosis through position-dependent site maturation
Click here to open pdf in another window PDF for Spatial regulation of clathrin-mediated endocytosis through position-dependent site maturation
Includes: Supplementary data
Journal Articles

Object detection networks and augmented reality for cellular detection in fluorescence microscopy

Dominic Waithe, Jill M. Brown, Katharina Reglinski, Isabel Diez-Sevilla, David Roberts, Christian Eggeling
Journal: Journal of Cell Biology
J Cell Biol (2020) 219 (10): e201903166.
DOI: https://doi.org/10.1083/jcb.201903166
Published: 26 August 2020
View article titled, Object detection networks and augmented reality for cellular detection in fluorescence microscopy
Click here to open pdf in another window PDF for Object detection networks and augmented reality for cellular detection in fluorescence microscopy
Includes: Supplementary data