Issues
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Cover Image
Cover Image
ON THE COVER
Chaves-Pérez et al. describe an unexpected role of transit-amplifying cells in controlling intestinal stem cell proliferation and organ regeneration. The cover shows a confocal immunofluorescence image of a mouse intestine section after irradiation. Intestinal epithelial cells are marked by GFP (green), and regenerative areas after intestinal damage are labeled with BrdU (red). Blue staining corresponds to cell nuclei (DAPI). Image © Chaves-Pérez et al., 2022. https://doi.org/10.1084/jem.20212405 - PDF Icon PDF LinkTable of Contents
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Insights
Innatus immunis: Evolving paradigm of adaptive NK cells
Shemesh et al. report that the development of FcRγ−/low adaptive-like NK cells requires reduced mTOR activity and depends on TGF-β or IFN-α.
Reviews
Metabolic features of innate lymphoid cells
Innate lymphoid cells are critical for tissue protection and immunity in animals, and their localization at the body’s surfaces position them to respond rapidly. Yu and colleagues review the metabolic pathways that underlie ILC phenotype and function and adaptation to dynamically changing conditions for homeostasis.
Brief Definitive Reports
Broader Epstein–Barr virus–specific T cell receptor repertoire in patients with multiple sclerosis
The EBV-specific T cell receptor repertoire is broader in multiple sclerosis patients, even in diseased siblings of discordant monozygotic twin pairs, indicating an ongoing immune response to Epstein–Barr virus in multiple sclerosis patients, which might hold clues for multiple sclerosis pathogenesis and future therapeutic or preventive avenues.
Technical Advances and Resources
A “multi-omics” analysis of blood–brain barrier and synaptic dysfunction in APOE4 mice
Using a multi-omics approach, this study provides a comprehensive database in humanized APOE4 transgenic mice showing dysregulated signaling mechanisms in endothelium and pericytes that reflect a molecular signature of a progressive blood–brain barrier failure that precedes synaptic dysfunction and behavioral deficits.
Articles
Diminished cell proliferation promotes natural killer cell adaptive-like phenotype by limiting FcεRIγ expression
Diminished human NK cell proliferation limits FcεRIγ expression, leading to an adaptive-like NK cell phenotype, and may have an early prognostic value for COVID-19 disease severity, associated with increased inflammation and higher TGFβ and IFNα levels.
Group 3 innate lymphoid cells require BATF to regulate gut homeostasis in mice
ILC3s are crucial for the maintenance of host–microbiota homeostasis in gastrointestinal mucosal tissues. This study shows that BATF globally shapes the chromatin landscape of intestinal ILC3s, which in turn orchestrates microbiota and mucosal CD4+ T cell immunity.
Chronic activation of pDCs in autoimmunity is linked to dysregulated ER stress and metabolic responses
The chronic activation of pDCs is a key feature in multiple autoimmune diseases. This article reports that pDCs from autoimmune patients have defects in the regulation of metabolic pathways and that blocking the TCA cycle abrogates chronic IFN-I responses.
Autoantibodies against type I IFNs in patients with critical influenza pneumonia
In an international cohort of 279 patients with hypoxemic influenza pneumonia, we identified 13 patients (4.6%) with autoantibodies neutralizing IFN-α and/or -ω, which were previously reported to underlie 15% cases of life-threatening COVID-19 pneumonia and one third of severe adverse reactions to live-attenuated yellow fever vaccine.
GPX4 regulates cellular necrosis and host resistance in Mycobacterium tuberculosis infection
Tissue necrosis is a major pathophysiological hallmark of disease progression in tuberculosis. In this study, Amaral et al. show that GPX4, an antioxidant selenoenzyme, is an essential regulator of both lipid peroxidation–mediated cellular necrosis and host resistance in Mycobacterium tuberculosis infection.
Sleep exerts lasting effects on hematopoietic stem cell function and diversity
Sleep interruption restructures the epigenome of hematopoietic stem and progenitor cells (HSPCs) and increases their proliferation, priming them for exaggerated inflammatory bursts and reducing hematopoietic clonal diversity through accelerated genetic drift. In humans, sleep restriction alters the HSPC epigenome and activates hematopoiesis.
A glycan-based approach to cell characterization and isolation: Hematopoiesis as a paradigm
Heparan sulfate (HS) glycotyping establishes a role for HS modification patterns in hematopoietic lineage differentiation in mouse and human, and provides an orthogonal approach to define and isolate viable cell types across different lineages and species.
EBF1 primes B-lymphoid enhancers and limits the myeloid bias in murine multipotent progenitors
B lineage transcription factor EBF1 is expressed at low levels in MPP3 and MPP4 cells. EBF1 primes the chromatin of B-lymphoid enhancers in MPP3 cells, and hematopoietic Ebf1 deletion results in augmented C/EBPα-target gene signature and enhanced myeloid differentiation.
Megakaryopoiesis impairment through acute innate immune signaling activation by azacitidine
Mitigation of treatment-induced thrombocytopenia is an unmet clinical need in patients with myelodysplastic syndrome or acute myeloid leukemia undergoing azacitidine therapy. Okoye-Okafor et al. uncover mechanistic drivers of AZA-induced platelet production impairment, which can be counteracted therapeutically.
Transit-amplifying cells control R-spondins in the mouse crypt to modulate intestinal stem cell proliferation
Chaves-Pérez et al. report mechanisms of regulation of ISC proliferation following injury. The death of transit-amplifying cells triggers inflammation that reduces R-spondin production within the crypt, thereby abolishing ISC proliferation. Transit-amplifying cells represent a cellular platform modulating inflammatory responses to control ISC proliferation and tissue regeneration.
Corrections
Correction: Broader Epstein–Barr virus–specific T cell receptor repertoire in patients with multiple sclerosis
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