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Table I.

Summary of novel proteins identified in the CCV preparation


Protein/gi

Domains/similarities

Mascot score

gel mass

predicted mass



kD
kD
KIAA1435a 7 WD-40 repeats and a FYVE domain 301 43 46.3 
KIAA1048a Serine/threonine kinase, contains NPF/DPF/DLL repeats 579 116 93.6 
KIAA1360 Serine/threonine kinase, contains NPF/DLL repeats (start codon not identified) 36 88 88.6 
KIAA1576 Homologous to Torpedo VAT-1 69 52 45.9 
13385744 No conserved domains or homologies 82 17 18.5 
13385773a,b Homologous to gi13384758, no other homologies or known domains 181 40 29.6 
13384758a Homologous to gi13385773, no other homologies or known domains 56 31 28.6 
12859193 GTP-binding protein 76 48 30.4 
12855458a SEC14 domain 73 36 40.8 
KIAA0171a
 
ENTH domain, two type II clathrin boxes, clathrin box-like sequence
 
355
 
80
 
68.2
 

Protein/gi

Domains/similarities

Mascot score

gel mass

predicted mass



kD
kD
KIAA1435a 7 WD-40 repeats and a FYVE domain 301 43 46.3 
KIAA1048a Serine/threonine kinase, contains NPF/DPF/DLL repeats 579 116 93.6 
KIAA1360 Serine/threonine kinase, contains NPF/DLL repeats (start codon not identified) 36 88 88.6 
KIAA1576 Homologous to Torpedo VAT-1 69 52 45.9 
13385744 No conserved domains or homologies 82 17 18.5 
13385773a,b Homologous to gi13384758, no other homologies or known domains 181 40 29.6 
13384758a Homologous to gi13385773, no other homologies or known domains 56 31 28.6 
12859193 GTP-binding protein 76 48 30.4 
12855458a SEC14 domain 73 36 40.8 
KIAA0171a
 
ENTH domain, two type II clathrin boxes, clathrin box-like sequence
 
355
 
80
 
68.2
 
a

Proteins identified in two independent preparations.

b

DNA sequence.

Detailed descriptions of each protein are provided in the text. The gel mass indicates the relative migratory position on the gel (estimated in kD) from where the best peptide matches were obtained as indicated by the listed Mascot scores. The predicted mass is determined from translation of the longest open reading frame.

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